PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00079.56
Common NameAMTR_s00079p00137860, LOC18432141
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 280aa    MW: 30789.4 Da    PI: 5.9807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00079.56genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08177224455
                                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +h+ +Er RR++iN+++  L++l+P +     k +  a +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00079.56 177 SHSLAERVRREKINERMRCLQDLVPGC----YKTMGMAVMLDEIINYVQSLQ 224
                                              8*************************9....35599999*********9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16171238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.03E-11171228No hitNo description
PROSITE profilePS5088815.853173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-17173234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-5177224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-9179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGDLQSQYCN NLRPPFPLMD IGDSGFELLN QYPEFNAILL ENPSLSNLQS LIGSCNELGL  60
MHQGSVHQQE VQMGSGFSGE SFSNGFLGSN CEELPKVQAN SQSSSALKYK NLENLEKDIR  120
GKKRKAGSAS ESSSEDKSPA NRKKGKCGSK SNSSERGGEK PNEVIHVRAR RGQATDSHSL  180
AERVRREKIN ERMRCLQDLV PGCYKTMGMA VMLDEIINYV QSLQHQVEFL SMKLTAASSL  240
FDFSLDTDAI EAPNGTNSWE VPDVERVVRE GYGGLTSFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842314.10.0PREDICTED: transcription factor bHLH75
SwissprotQ8GWK77e-53BEE3_ARATH; Transcription factor BEE 3
TrEMBLW1P8H80.0W1P8H8_AMBTC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-52BR enhanced expression 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]